내 생명과도 같은 시간의 집합

[KRX2A1]oracle@krx2adb01:/home/oracle> R CMD INSTALL rJava_0.9-4.tar.gz

* installing to library ‘/usr/lib64/R/library’

* installing *source* package ‘rJava’ ...

** package ‘rJava’ successfully unpacked and MD5 sums checked

checking for gcc... gcc -m64 -std=gnu99

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc -m64 -std=gnu99 accepts -g... yes

checking for gcc -m64 -std=gnu99 option to accept ISO C89... none needed

checking how to run the C preprocessor... gcc -m64 -std=gnu99 -E

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for ANSI C header files... yes

checking for sys/wait.h that is POSIX.1 compatible... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking for string.h... (cached) yes

checking sys/time.h usability... yes

checking sys/time.h presence... yes

checking for sys/time.h... yes

checking for unistd.h... (cached) yes

checking for an ANSI C-conforming const... yes

checking whether time.h and sys/time.h may both be included... yes

configure: checking whether gcc -m64 -std=gnu99 supports static inline...

yes

checking whether setjmp.h is POSIX.1 compatible... yes

checking whether sigsetjmp is declared... yes

checking whether siglongjmp is declared... yes

checking Java support in R... present:

interpreter : '/u01/app/oracle/product/11.2.0.3/dbhome_1/jdk/jre/bin/java'

archiver    : '/u01/app/oracle/product/11.2.0.3/dbhome_1/jdk/bin/jar'

compiler    : '/u01/app/oracle/product/11.2.0.3/dbhome_1/jdk/bin/javac'

header prep.: '/u01/app/oracle/product/11.2.0.3/dbhome_1/jdk/bin/javah'

cpp flags   : '-I/u01/app/oracle/product/11.2.0.3/dbhome_1/jdk/include -I/u01/app/oracle/product/11.2.0.3/dbhome_1/jdk/include/linux'

java libs   : '-L/u01/app/oracle/product/11.2.0.3/dbhome_1/jdk/jre/lib/amd64/server -L/u01/app/oracle/product/11.2.0.3/dbhome_1/jdk/jre/lib/amd64 -L/u01/app/oracle/product/11.2.0.3/dbhome_1/jdk/jre/../lib/amd64 -ljvm'

checking whether JNI programs can be compiled... yes

checking JNI data types... configure: error: One or more JNI types differ from the corresponding native type. You may need to use non-standard compiler flags or a different compiler in order to fix this.

ERROR: configuration failed for package ‘rJava’

* removing ‘/usr/lib64/R/library/rJava’

[KRX2A1]oracle@krx2adb01:/home/oracle> export JAVA_HOME=/u01/app/oracle/product/11.2.0.3/dbhome_1/jdk/jre

[KRX2A1]oracle@krx2adb01:/home/oracle> R CMD javareconf -e

Java interpreter : /u01/app/oracle/product/11.2.0.3/dbhome_1/jdk/jre/bin/java

Java version     : 1.5.0_30

Java home path   : /u01/app/oracle/product/11.2.0.3/dbhome_1/jdk/jre

Java compiler    : /u01/app/oracle/product/11.2.0.3/dbhome_1/jdk/jre/../bin/javac

Java headers gen.: /u01/app/oracle/product/11.2.0.3/dbhome_1/jdk/jre/../bin/javah

Java archive tool: /u01/app/oracle/product/11.2.0.3/dbhome_1/jdk/jre/../bin/jar

Java library path: $(JAVA_HOME)/lib/amd64/server:$(JAVA_HOME)/lib/amd64:$(JAVA_HOME)/../lib/amd64

JNI linker flags : -L$(JAVA_HOME)/lib/amd64/server -L$(JAVA_HOME)/lib/amd64 -L$(JAVA_HOME)/../lib/amd64 -ljvm

JNI cpp flags    : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/linux

The following Java variables have been exported:

JAVA_HOME JAVA JAVAC JAVAH JAR JAVA_LIBS JAVA_CPPFLAGS JAVA_LD_LIBRARY_PATH

Running: /bin/bash

[oracle@krx2adb01 ~]$ unset JAVA_HOME

[oracle@krx2adb01 ~]$ R CMD INSTALL rJava_0.9-4.tar.gz